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LOC102577544 DNA-binding protein p24 [ Solanum tuberosum (potato) ]

Gene ID: 102577544, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102577544
Gene description
DNA-binding protein p24
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
WHY1; PBF-2; StWhy1
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Genomic context

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See LOC102577544 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239166.1 (960176..963580)

NW_006239166.1Genomic Context describing neighboring genes Neighboring gene pectate lyase-like Neighboring gene uncharacterized LOC102599958 Neighboring gene probable WRKY transcription factor 72 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g14390

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239166.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A "Whirly" transcription factor is required for salicylic acid-dependent disease resistance in Arabidopsis. Desveaux D, et al. Dev Cell, 2004 Feb. PMID 14960277
  2. A new family of plant transcription factors displays a novel ssDNA-binding surface. Desveaux D, et al. Nat Struct Biol, 2002 Jul. PMID 12080340
  3. PBF-2 is a novel single-stranded DNA binding factor implicated in PR-10a gene activation in potato. Desveaux D, et al. Plant Cell, 2000 Aug. PMID 10948264, Free PMC Article
  4. Whirly transcription factors: defense gene regulation and beyond. Desveaux D, et al. Trends Plant Sci, 2005 Feb. PMID 15708347
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA-binding protein WHY1, chloroplastic
Names
PR-10a binding factor 2
Protein WHIRLY 1
Single-stranded DNA-binding protein WHY1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288226.1 → NP_001275155.1  single-stranded DNA-binding protein WHY1, chloroplastic

    See identical proteins and their annotated locations for NP_001275155.1

    Status: PROVISIONAL

    Source sequence(s)
    AF233342
    UniProtKB/Swiss-Prot
    Q9LL85
    Conserved Domains (1) summary
    pfam08536
    Location:98 → 233
    Whirly; Whirly transcription factor

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239166.1 Reference SolTub_3.0 Primary Assembly

    Range
    960176..963580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LL85.1 GenPept UniProtKB/Swiss-Prot:Q9LL85

Gene LinkOut

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Molecular Biology Databases