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R1 starch-granule-bound R1 protein [ Solanum tuberosum (potato) ]

Gene ID: 102577510, updated on 2-Nov-2023

Summary

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Gene symbol
R1
Gene description
starch-granule-bound R1 protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Also known as
GWD
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239172.1 (954662..970119, complement)

NW_006239172.1Genomic Context describing neighboring genes Neighboring gene lipase Neighboring gene uncharacterized LOC102587417

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239172.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional domain organization of the potato alpha-glucan, water dikinase (GWD): evidence for separate site catalysis as revealed by limited proteolysis and deletion mutants. Mikkelsen R, et al. Biochem J, 2005 Jan 15. PMID 15361065, Free PMC Article
  2. Functional characterization of alpha-glucan,water dikinase, the starch phosphorylating enzyme. Mikkelsen R, et al. Biochem J, 2004 Jan 15. PMID 14525539, Free PMC Article
  3. The starch-related R1 protein is an alpha -glucan, water dikinase. Ritte G, et al. Proc Natl Acad Sci U S A, 2002 May 14. PMID 12011472, Free PMC Article
  4. Production of highly phosphorylated glycopolymers by expression of R1 in Escherichia coli. Viksø-Nielsen A, et al. Carbohydr Res, 2002 Feb 18. PMID 11841813
  5. Reversible binding of the starch-related R1 protein to the surface of transitory starch granules. Ritte G, et al. Plant J, 2000 Feb. PMID 10758490

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-glucan water dikinase, chloroplastic
Names
Alpha-glucan water dikinase, chloroplastic
starch associated protein R1
starch-related R1 protein
NP_001275052.1
XP_006357619.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288123.1 → NP_001275052.1  alpha-glucan water dikinase, chloroplastic

    See identical proteins and their annotated locations for NP_001275052.1

    Status: PROVISIONAL

    Source sequence(s)
    EU599037
    UniProtKB/Swiss-Prot
    O82061, Q9AWA5
    UniProtKB/TrEMBL
    B2M0R3
    Conserved Domains (1) summary
    pfam01326
    Location:1265 → 1462
    PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239172.1 Reference SolTub_3.0 Primary Assembly

    Range
    954662..970119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006357557.2 → XP_006357619.1  alpha-glucan water dikinase, chloroplastic isoform X1

    UniProtKB/Swiss-Prot
    O82061, Q9AWA5
    UniProtKB/TrEMBL
    M1ACN9
    Conserved Domains (1) summary
    pfam01326
    Location:1266 → 1463
    PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9AWA5.2 GenPept UniProtKB/Swiss-Prot:Q9AWA5

Gene LinkOut

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Molecular Biology Databases
Research Materials