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PAIN-1 beta-fructosidase [ Solanum tuberosum (potato) ]

Gene ID: 102577489, updated on 2-Nov-2023

Summary

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Gene symbol
PAIN-1
Gene description
beta-fructosidase
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See PAIN-1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239529.1 (104052..108002, complement)

NW_006239529.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 7 Neighboring gene monocopper oxidase-like protein SKS1 Neighboring gene trehalose-phosphate phosphatase A Neighboring gene BAG family molecular chaperone regulator 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239529.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Soluble acid invertase determines the hexose-to-sucrose ratio in cold-stored potato tubers. Zrenner R, et al. Planta, 1996. PMID 8580777
  2. Complete nucleotide sequence of potato tuber acid invertase cDNA. Zhou D, et al. Plant Physiol, 1994 Sep. PMID 7972524, Free PMC Article
  3. Subtle Regulation of Potato Acid Invertase Activity by a Protein Complex of Invertase, Invertase Inhibitor, and SUCROSE NONFERMENTING1-RELATED PROTEIN KINASE. Lin Y, et al. Plant Physiol, 2015 Aug. PMID 26134163, Free PMC Article
  4. Natural diversity of potato (Solanum tuberosum) invertases. Draffehn AM, et al. BMC Plant Biol, 2010 Dec 9. PMID 21143910, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that a protein complex of acid invertase and protein-serine-threonine kinase is identified in tubers.
    Title: Subtle Regulation of Potato Acid Invertase Activity by a Protein Complex of Invertase, Invertase Inhibitor, and SUCROSE NONFERMENTING1-RELATED PROTEIN KINASE.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-fructofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-fructosidase
Names
acid invertase
beta-fructofuranosidase
vacuolar invertase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288064.1 → NP_001274993.1  beta-fructosidase

    See identical proteins and their annotated locations for NP_001274993.1

    Status: PROVISIONAL

    Source sequence(s)
    JN661862
    UniProtKB/TrEMBL
    G9IHF3, G9IHF4
    Conserved Domains (4) summary
    smart00640
    Location:111 → 586
    Glyco_32; Glycosyl hydrolases family 32
    pfam00251
    Location:111 → 430
    Glyco_hydro_32N; Glycosyl hydrolases family 32 N-terminal domain
    pfam08244
    Location:503 → 586
    Glyco_hydro_32C; Glycosyl hydrolases family 32 C terminal
    pfam11837
    Location:69 → 103
    DUF3357; Domain of unknown function (DUF3357)

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239529.1 Reference SolTub_3.0 Primary Assembly

    Range
    104052..108002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases