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LOC102557319 carcinoembryonic antigen-related cell adhesion molecule 3-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 102557319, updated on 4-Jan-2025

Summary

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Symbol
LOC102557319provided by RGD
Full Name
carcinoembryonic antigen-related cell adhesion molecule 3-likeprovided by RGD
Primary source
RGD:7698003
See related
EnsemblRapid:ENSRNOG00000071114 AllianceGenome:RGD:7698003
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CEACAM7 (CEA cell adhesion molecule 7). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC102557319 in Genome Data Viewer
Location:
1q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (87567834..87578040, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (78439784..78449990, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (79698601..79708808, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene phosphoglycerate dehydrogenase, pseudogene 2 Neighboring gene pregnancy specific glycoprotein 19 Neighboring gene FKBP prolyl isomerase 1A, pseudogene 1 Neighboring gene WD repeat domain 13, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
carcinoembryonic antigen-related cell adhesion molecule 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329892.1 → NP_001316821.1  carcinoembryonic antigen-related cell adhesion molecule 3-like precursor

    Status: PROVISIONAL

    Source sequence(s)
    BC097327
    UniProtKB/TrEMBL
    A6J8H6, G3V9P6, Q4V8L5
    Related
    ENSRNOP00000054809.4, ENSRNOT00000058000.6
    Conserved Domains (3) summary
    cd05774
    Location:276 → 380
    Ig_CEACAM_D1; First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)
    smart00410
    Location:45 → 136
    IG_like; Immunoglobulin like
    cl11960
    Location:382 → 472
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    87567834..87578040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials