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LOC102556878 uncharacterized LOC102556878 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102556878, updated on 17-Aug-2024

Summary

Symbol
LOC102556878provided by RGD
Full Name
uncharacterized LOC102556878provided by RGD
Primary source
RGD:7709785
See related
EnsemblRapid:ENSRNOG00000088492 AllianceGenome:RGD:7709785
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Restricted expression toward (RPKM 37.8) See more
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Genomic context

See LOC102556878 in Genome Data Viewer
Location:
2q45
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (251480503..251551353, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (248822026..248892610, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (266194050..266275690, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene DEP domain containing 1 Neighboring gene retinoid isomerohydrolase RPE65 Neighboring gene transfer RNA isoleucine (anticodon AAU) 1 Neighboring gene Wnt ligand secretion mediator Neighboring gene succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    251480503..251551353 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_591425.4 RNA Sequence

    Related
    ENSRNOT00000166094.1