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Ska2l1 spindle and kinetochore associated complex subunit 2 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102555739, updated on 14-Nov-2024

Summary

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Official Symbol
Ska2l1provided by RGD
Official Full Name
spindle and kinetochore associated complex subunit 2 like 1provided by RGD
Primary source
RGD:7704573
See related
EnsemblRapid:ENSRNOG00000020446 AllianceGenome:RGD:7704573
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
AABR07005838.1
Summary
Predicted to enable microtubule binding activity. Predicted to be involved in cell division and chromosome segregation. Predicted to be located in cytoplasm and spindle microtubule. Predicted to be part of outer kinetochore. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 34.8) and Thymus (RPKM 7.5) See more
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Genomic context

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See Ska2l1 in Genome Data Viewer
Location:
1q37
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (193657022..193730465)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (184226732..184300750)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (202832365..202833985)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103691243 Neighboring gene WD repeat domain 11 Neighboring gene uncharacterized LOC120099941 Neighboring gene uncharacterized LOC102555965 Neighboring gene small nucleolar RNA SNORA48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell division IEA
Inferred from Electronic Annotation
more info
  
involved_in chromosome segregation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chromosome segregation IEA
Inferred from Electronic Annotation
more info
  
involved_in mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of outer kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of outer kinetochore IEA
Inferred from Electronic Annotation
more info
  
is_active_in spindle microtubule IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in spindle microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spindle and kinetochore-associated protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    193657022..193730465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039101235.2 → XP_038957163.1  spindle and kinetochore-associated protein 2-like

    UniProtKB/TrEMBL
    A0A8I6G7C3
    Related
    ENSRNOP00000080953.1, ENSRNOT00000027709.4
    Conserved Domains (1) summary
    cl17165
    Location:11 → 126
    SKA2; Spindle and kinetochore-associated protein 2

RNA

  1. XR_001836024.3 RNA Sequence

  2. XR_010063167.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials