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LOC102554669 uncharacterized LOC102554669 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102554669, updated on 17-Aug-2024

Summary

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Symbol
LOC102554669provided by RGD
Full Name
uncharacterized LOC102554669provided by RGD
Primary source
RGD:7638517
See related
AllianceGenome:RGD:7638517
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 52.1), Heart (RPKM 24.5) and 9 other tissues See more
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Genomic context

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See LOC102554669 in Genome Data Viewer
Location:
12p11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (15462831..15472141)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (10349045..10359627)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (12330401..12338817)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene BAR/IMD domain containing adaptor protein 2 like 1 Neighboring gene ubiquitin-conjugating enzyme E2N, pseudogene 5 Neighboring gene brain protein I3 Neighboring gene tectonin beta-propeller repeat containing 1 Neighboring gene basic helix-loop-helix family, member a15 Neighboring gene lemur tyrosine kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    15462831..15472141
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    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005491695.2 RNA Sequence

  2. XR_595259.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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