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LOC102550999 uncharacterized LOC102550999 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102550999, updated on 17-Aug-2024

Summary

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Symbol
LOC102550999provided by RGD
Full Name
uncharacterized LOC102550999provided by RGD
Primary source
RGD:7578813
See related
AllianceGenome:RGD:7578813
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Lung (RPKM 32.0), Testes (RPKM 6.3) and 6 other tissues See more
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Genomic context

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See LOC102550999 in Genome Data Viewer
Location:
3q42
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (169634367..169699151, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (149214619..149276915, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (156556574..156618876, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550814 Neighboring gene uncharacterized LOC102550898 Neighboring gene uncharacterized LOC134486199 Neighboring gene uncharacterized LOC103691948 Neighboring gene DNA topoisomerase I Neighboring gene uncharacterized LOC102551164

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    169634367..169699151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010065017.1 RNA Sequence

  2. XR_010065016.1 RNA Sequence

  3. XR_010065018.1 RNA Sequence

  4. XR_001837344.3 RNA Sequence

  5. XR_001837346.3 RNA Sequence

  6. XR_005502688.2 RNA Sequence

  7. XR_010065021.1 RNA Sequence

  8. XR_591818.4 RNA Sequence

  9. XR_010065022.1 RNA Sequence

  10. XR_001837347.3 RNA Sequence

  11. XR_010065019.1 RNA Sequence

  12. XR_591817.4 RNA Sequence

  13. XR_010065020.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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