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Tmem217 transmembrane protein 217 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102547645, updated on 9-Dec-2024

Summary

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Symbol
Tmem217provided by RGD
Full Name
transmembrane protein 217provided by RGD
Primary source
RGD:1585322
See related
AllianceGenome:RGD:1585322
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human TMEM217 (transmembrane protein 217). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward (RPKM 26.8) See more
Orthologs
human mouse all
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Genomic context

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See Tmem217 in Genome Data Viewer
Location:
20p12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (7594223..7620628, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (7584177..7619023, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (8194171..8195098, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene Pim-1 proto-oncogene, serine/threonine kinase Neighboring gene RAN, member RAS oncogene family, pseudogene 5 Neighboring gene transmembrane protein 217B Neighboring gene TBC1 domain family, member 22B Neighboring gene ring finger protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 217
Names
transmembrane protein 217-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432504.1 → NP_001419433.1  transmembrane protein 217

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    A6JJV2, M0RD60

  2. NM_001432505.1 → NP_001419434.1  transmembrane protein 217

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    A6JJV2, M0RD60

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    7594223..7620628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039099298.2 → XP_038955226.1  transmembrane protein 217 isoform X1

    Conserved Domains (1) summary
    pfam15049
    Location:111 → 268
    DUF4534; Protein of unknown function (DUF4534)

  2. XM_039099301.2 → XP_038955229.1  transmembrane protein 217 isoform X2

    UniProtKB/TrEMBL
    A6JJV2, M0RD60
    Conserved Domains (1) summary
    pfam15049
    Location:11 → 168
    DUF4534; Protein of unknown function (DUF4534)

  3. XM_039099299.2 → XP_038955227.1  transmembrane protein 217 isoform X2

    Conserved Domains (1) summary
    pfam15049
    Location:11 → 168
    DUF4534; Protein of unknown function (DUF4534)

  4. XM_063279660.1 → XP_063135730.1  transmembrane protein 217 isoform X2

    UniProtKB/TrEMBL
    A6JJV2, M0RD60
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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