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Prrt1b proline rich transmembrane protein 1B [ Rattus norvegicus (Norway rat) ]

Gene ID: 102546892, updated on 27-Nov-2024

Summary

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Symbol
Prrt1bprovided by RGD
Full Name
proline rich transmembrane protein 1Bprovided by RGD
Primary source
RGD:7582623
See related
EnsemblRapid:ENSRNOG00000046655 AllianceGenome:RGD:7582623
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
AABR07051395.1
Summary
Predicted to be located in membrane. Orthologous to human PRRT1B (proline rich transmembrane protein 1B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 26.7), Heart (RPKM 5.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Prrt1b in Genome Data Viewer
Location:
3p12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (33418432..33426492, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (13019852..13028865, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (8312385..8317837, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC134486065 Neighboring gene uncharacterized LOC134486064 Neighboring gene golgin A2 like 1 Neighboring gene uncharacterized LOC134486066

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proline rich transmembrane protein 1B
Names
proline-rich protein HaeIII subfamily 1
proline-rich protein HaeIII subfamily 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430746.1 → NP_001417675.1  proline rich transmembrane protein 1B isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    M0RCN8

  2. NM_001430747.1 → NP_001417676.1  proline rich transmembrane protein 1B isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    33418432..33426492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006233903.5 → XP_006233965.1  proline rich transmembrane protein 1B isoform X1

    Related
    ENSRNOP00000112394.1, ENSRNOT00000148897.1
    Conserved Domains (1) summary
    pfam04505
    Location:162 → 235
    CD225; Interferon-induced transmembrane protein

  2. XM_063284838.1 → XP_063140908.1  proline rich transmembrane protein 1B isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials