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Zfp658 zinc finger protein 658 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102546648, updated on 9-Dec-2024

Summary

Official Symbol
Zfp658provided by RGD
Official Full Name
zinc finger protein 658provided by RGD
Primary source
RGD:7541917
See related
EnsemblRapid:ENSRNOG00000023233 AllianceGenome:RGD:7541917
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Brain (RPKM 36.9), Kidney (RPKM 29.8) and 9 other tissues See more
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Genomic context

See Zfp658 in Genome Data Viewer
Location:
1q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103129001..103143510)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (93992467..94005689)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (99483176..99496427)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene SIGLEC family like 1 Neighboring gene CD33 molecule Neighboring gene zinc finger protein 719 Neighboring gene zinc finger protein 819 Neighboring gene uncharacterized LOC120099801 Neighboring gene CEA cell adhesion molecule 18

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC102546648
Names
zinc finger protein 175
zinc finger protein 175-like
zinc finger protein 658-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420023.1NP_001406952.1  uncharacterized protein LOC102546648

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    M0RCK0

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    103129001..103143510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008759440.4XP_008757662.1  uncharacterized protein LOC102546648 isoform X1

    See identical proteins and their annotated locations for XP_008757662.1

    UniProtKB/TrEMBL
    M0RCK0
    Conserved Domains (4) summary
    smart00349
    Location:2380
    KRAB; krueppel associated box
    COG5048
    Location:378813
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:313400
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:634654
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_008759441.4XP_008757663.1  uncharacterized protein LOC102546648 isoform X1

    See identical proteins and their annotated locations for XP_008757663.1

    UniProtKB/TrEMBL
    M0RCK0
    Related
    ENSRNOP00000067320.1, ENSRNOT00000074820.3
    Conserved Domains (4) summary
    smart00349
    Location:2380
    KRAB; krueppel associated box
    COG5048
    Location:378813
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:313400
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:634654
    ZF_C2H2; C2H2 Zn finger [structural motif]