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LOC102546642 uncharacterized LOC102546642 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102546642, updated on 17-Aug-2024

Summary

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Symbol
LOC102546642provided by RGD
Full Name
uncharacterized LOC102546642provided by RGD
Primary source
RGD:7706312
See related
AllianceGenome:RGD:7706312
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Restricted expression toward (RPKM 6.6) See more
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Genomic context

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See LOC102546642 in Genome Data Viewer
Location:
5q36
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (158462719..158467646)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (153179682..153185652)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (159399199..159404086)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene peptidyl arginine deiminase 3 Neighboring gene peptidyl arginine deiminase 1 Neighboring gene transfer RNA alanine (anticodon GGC) 1 Neighboring gene peptidyl arginine deiminase 2 Neighboring gene succinate dehydrogenase complex iron sulfur subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    158462719..158467646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_354383.4 RNA Sequence

  2. XR_005505073.2 RNA Sequence

  3. XR_010052006.1 RNA Sequence

  4. XR_005505074.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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