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DNAAF3-AS1 DNAAF3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101930593, updated on 22-Oct-2024

Summary

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Official Symbol
DNAAF3-AS1provided by HGNC
Official Full Name
DNAAF3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55292
See related
Ensembl:ENSG00000267577 AllianceGenome:HGNC:55292
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 12.1), lung (RPKM 3.6) and 4 other tissues See more
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Genomic context

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See DNAAF3-AS1 in Genome Data Viewer
Location:
19q13.42
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (55159309..55166904)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (58253398..58260969)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene troponin T1, slow skeletal type Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15077 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:55652829-55653333 Neighboring gene troponin I3, cardiac type Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55668291-55668878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55672120-55673046 Neighboring gene dynein axonemal assembly factor 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:55677361-55677592 Neighboring gene small nucleolar RNA U13 Neighboring gene synaptotagmin 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15078 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:55691190-55691602

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    55159309..55166904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067344.1 RNA Sequence

  2. XR_007067345.1 RNA Sequence

  3. XR_001754014.2 RNA Sequence

    Related
    ENST00000805277.1

  4. XR_007067343.1 RNA Sequence

  5. XR_001754015.2 RNA Sequence

  6. XR_936074.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    58253398..58260969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089264.1 RNA Sequence

  2. XR_007089260.1 RNA Sequence

  3. XR_007089261.1 RNA Sequence

  4. XR_007089262.1 RNA Sequence

  5. XR_007089263.1 RNA Sequence

Nucleotide Protein
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