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LINC01333 long intergenic non-protein coding RNA 1333 [ Homo sapiens (human) ]

Gene ID: 101929082, updated on 10-Dec-2024

Summary

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Official Symbol
LINC01333provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1333provided by HGNC
Primary source
HGNC:HGNC:50539
See related
Ensembl:ENSG00000249343 AllianceGenome:HGNC:50539
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.6) See more
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Genomic context

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See LINC01333 in Genome Data Viewer
Location:
5q13.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (74322486..74328357)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (74803533..74809389)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (73618311..73624182)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1335 Neighboring gene RNA, 7SL, cytoplasmic 814, pseudogene Neighboring gene long intergenic non-protein coding RNA 1331 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22665 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22667 Neighboring gene NANOG hESC enhancer GRCh37_chr5:73811827-73812386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:73838511-73839072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22668 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22669 Neighboring gene CRISPRi-validated cis-regulatory element chr5.1766 Neighboring gene Sharpr-MPRA regulatory region 12094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:73906972-73907472 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:73907473-73907973 Neighboring gene uncharacterized LOC124901005 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:73920707-73921208

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • CTD-2275D24.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_105010.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106732
    Related
    ENST00000830266.1

  2. NR_197439.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106732

  3. NR_197440.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106732

  4. NR_197441.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106732

  5. NR_197442.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106732

  6. NR_197443.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106732

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    74322486..74328357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    74803533..74809389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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