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LOC101928627 uncharacterized LOC101928627 [ Homo sapiens (human) ]

Gene ID: 101928627, updated on 10-Dec-2024

Summary

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Gene symbol
LOC101928627
Gene description
uncharacterized LOC101928627
See related
Ensembl:ENSG00000226484
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928627 in Genome Data Viewer
Location:
Xp21.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (36365626..36440292, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (35961372..36036060, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (36383741..36458375, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 47 Neighboring gene RNA, U6 small nuclear 641, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:36216564-36217118 Neighboring gene NANOG hESC enhancer GRCh37_chrX:36233110-36233611 Neighboring gene high mobility group box 1 pseudogene 16 Neighboring gene ribosomal protein S15a pseudogene 40 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:36449855-36451054 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:36451102-36451307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:36489007-36489587 Neighboring gene uncharacterized LOC105373155 Neighboring gene H2A.L variant histone 1Q

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110412.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC233310, AK092146, AL606516
    Related
    ENST00000455438.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    36365626..36440292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    35961372..36036060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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