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LOC101928392 uncharacterized LOC101928392 [ Homo sapiens (human) ]

Gene ID: 101928392, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928392
Gene description
uncharacterized LOC101928392
See related
Ensembl:ENSG00000261285
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928392 in Genome Data Viewer
Location:
16q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (82545071..82575449, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (88609382..88639761, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (82578676..82609054, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene Neighboring gene uncharacterized LOC124903788 Neighboring gene NANOG hESC enhancer GRCh37_chr16:82632313-82632847 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:82639412-82639926 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:82639927-82640441 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:82654558-82655058 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:82662659-82663858 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:82677536-82678144 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:82678145-82678752 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:82687085-82688284 Neighboring gene Sharpr-MPRA regulatory region 6595 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:82732677-82733876 Neighboring gene VISTA enhancer hs1959 Neighboring gene cadherin 13 Neighboring gene uncharacterized LOC101928446 Neighboring gene microRNA 8058

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. Adkins DE, et al. Mol Psychiatry, 2011 Mar. PMID 20195266, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188568.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009117, AC092351
    Related
    ENST00000565374.2

  2. NR_188569.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009117, AC092351

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    82545071..82575449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    88609382..88639761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials