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LINC02125 long intergenic non-protein coding RNA 2125 [ Homo sapiens (human) ]

Gene ID: 101928203, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02125provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2125provided by HGNC
Primary source
HGNC:HGNC:52982
See related
Ensembl:ENSG00000250514 AllianceGenome:HGNC:52982
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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See LINC02125 in Genome Data Viewer
Location:
16q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (76634998..76658478)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (82691173..82714658)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (76668895..76692375)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L18 pseudogene 13 Neighboring gene RN7SK pseudogene 233 Neighboring gene contactin associated protein family member 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44671 Neighboring gene NANOG hESC enhancer GRCh37_chr16:76716883-76717434 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_44716 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:76749983-76751182 Neighboring gene uncharacterized LOC105376774 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:76838358-76839557 Neighboring gene microRNA 4719

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK057218
    Related
    ENST00000512279.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    76634998..76658478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    82691173..82714658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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