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LOC101928047 uncharacterized LOC101928047 [ Homo sapiens (human) ]

Gene ID: 101928047, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928047
Gene description
uncharacterized LOC101928047
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 4.2), bone marrow (RPKM 1.1) and 3 other tissues See more
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Genomic context

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See LOC101928047 in Genome Data Viewer
Location:
6p25.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (6709377..6733391)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (6578609..6599494)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene LY86 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23921 Neighboring gene calponin 3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23924 Neighboring gene lymphocyte antigen 86 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23925 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:6654090-6654280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6674525-6675024 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:6694456-6695405 Neighboring gene uncharacterized LOC101928004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6712197-6712986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23927 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6725016-6725709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6750245-6750862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6751483-6752100 Neighboring gene uncharacterized LOC105374901 Neighboring gene uncharacterized LOC124901254

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    6709377..6733391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743949.2 RNA Sequence

  2. XR_002956321.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    6578609..6599494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076488.1 RNA Sequence

  2. XR_007076487.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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