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LOC101927552 uncharacterized LOC101927552 [ Homo sapiens (human) ]

Gene ID: 101927552, updated on 10-Dec-2024

Summary

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Gene symbol
LOC101927552
Gene description
uncharacterized LOC101927552
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.9), thyroid (RPKM 1.4) and 24 other tissues See more
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Genomic context

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See LOC101927552 in Genome Data Viewer
Location:
9q21.32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (83817666..83837583)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (95967352..95987319)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ubiquilin 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86321896-86322786 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86322787-86323675 Neighboring gene UBQLN1 antisense RNA 1 Neighboring gene uncharacterized LOC124902191 Neighboring gene G kinase anchoring protein 1 Neighboring gene MPRA-validated peak7279 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86419564-86420465 Neighboring gene MPRA-validated peak7280 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19978 Neighboring gene uncharacterized LOC124900638 Neighboring gene kinesin family member 27 Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:86535879-86536628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:86537243-86537747

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    83817666..83837583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746793.2 RNA Sequence

  2. XR_001746789.2 RNA Sequence

  3. XR_001746790.2 RNA Sequence

  4. XR_001746791.3 RNA Sequence

  5. XR_001746785.2 RNA Sequence

  6. XR_001746784.2 RNA Sequence

  7. XR_002956861.2 RNA Sequence

  8. XR_001746788.2 RNA Sequence

  9. XR_001746794.2 RNA Sequence

  10. XR_001746795.2 RNA Sequence

  11. XR_007061619.1 RNA Sequence

  12. XR_007061618.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    95967352..95987319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079614.1 RNA Sequence

  2. XR_007079611.1 RNA Sequence

  3. XR_007079612.1 RNA Sequence

  4. XR_007079605.1 RNA Sequence

  5. XR_007079609.1 RNA Sequence

  6. XR_007079608.1 RNA Sequence

  7. XR_007079613.1 RNA Sequence

  8. XR_007079610.1 RNA Sequence

  9. XR_007079615.1 RNA Sequence

  10. XR_007079616.1 RNA Sequence

  11. XR_007079607.1 RNA Sequence

  12. XR_007079606.1 RNA Sequence

Nucleotide Protein
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