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LINC01821 long intergenic non-protein coding RNA 1821 [ Homo sapiens (human) ]

Gene ID: 101927406, updated on 22-Oct-2024

Summary

Official Symbol
LINC01821provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1821provided by HGNC
Primary source
HGNC:HGNC:52626
See related
Ensembl:ENSG00000225539 AllianceGenome:HGNC:52626
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01821 in Genome Data Viewer
Location:
2q32.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (194344269..194419631)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (194828097..194903692)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (195208993..195284355)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene glutamate-ammonia ligase pseudogene 6 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 47 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16885 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:195129495-195129994 Neighboring gene uncharacterized LOC105373816 Neighboring gene Zn regulated GTPase metalloprotein activator 1F pseudogene Neighboring gene small nucleolar RNA SNORD59

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110222.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC038548, DA512861
    Related
    ENST00000778670.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    194344269..194419631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    194828097..194903692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)