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pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting [ Danio rerio (zebrafish) ]

Gene ID: 101887130, updated on 3-Dec-2024

Summary

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Gene symbol
pkd1l1
Gene description
polycystin 1 like 1, transient receptor potential channel interacting
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See pkd1l1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (17279329..17334560)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (17139666..17188535)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene bmi1 polycomb ring finger oncogene 1a Neighboring gene sperm associated antigen 6 Neighboring gene si:dkey-117j14.6 Neighboring gene protein disulfide isomerase family A, member 4 Neighboring gene enhancer of zeste 2 polycomb repressive complex 2 subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Loss of zebrafish pkd1l1 causes biliary defects that have implications for biliary atresia splenic malformation. Ali RQ, et al. Dis Model Mech, 2023 Oct 1. PMID 37675454, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Loss of zebrafish pkd1l1 causes biliary defects that have implications for biliary atresia splenic malformation.
    Title: Loss of zebrafish pkd1l1 causes biliary defects that have implications for biliary atresia splenic malformation.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
polycystin-1-like protein 1
Names
polycystic kidney disease 1 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    17279329..17334560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217126.1 → XP_068073227.1  polycystin-1-like protein 1

    UniProtKB/TrEMBL
    A0A8M9PXN6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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