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LOC101886482 rho guanine nucleotide exchange factor TIAM2 [ Danio rerio (zebrafish) ]

Gene ID: 101886482, updated on 3-Dec-2024

Summary

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Gene symbol
LOC101886482
Gene description
rho guanine nucleotide exchange factor TIAM2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC101886482 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (4265329..4347348)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4530198..4610248)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene interaction protein for cytohesin exchange factors 1 Neighboring gene uncharacterized LOC137488609 Neighboring gene claudin-20 Neighboring gene BCL11 transcription factor B b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rho guanine nucleotide exchange factor TIAM2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    4265329..4347348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468594.2 → XP_021324269.1  rho guanine nucleotide exchange factor TIAM2

    UniProtKB/TrEMBL
    A0A8M9PHR3
    Conserved Domains (5) summary
    smart00325
    Location:1073 → 1262
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases
    cd00992
    Location:890 → 963
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01230
    Location:475 → 601
    PH1_Tiam1_2; T-lymphoma invasion and metastasis 1 and 2 Pleckstrin Homology (PH) domain, N-terminal domain
    cl00155
    Location:806 → 878
    UBQ; Ubiquitin-like proteins
    cl17171
    Location:1264 → 1423
    PH-like; Pleckstrin homology-like domain

  2. XM_068215616.1 → XP_068071717.1  rho guanine nucleotide exchange factor TIAM2

    UniProtKB/TrEMBL
    A0A8M9PHR3
Nucleotide Protein Strain
Heading Accession and Version

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