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LOC101885977 Rap guanine nucleotide exchange factor (GEF) 6-like [ Danio rerio (zebrafish) ]

Gene ID: 101885977, updated on 12-Sep-2024

Summary

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Gene symbol
LOC101885977
Gene description
Rap guanine nucleotide exchange factor (GEF) 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC101885977 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (45554549..45575007)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (45512154..45532663)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488852 Neighboring gene folliculin interacting protein 1 Neighboring gene acyl-CoA synthetase long chain family member 6 Neighboring gene interferon regulatory factor 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rap guanine nucleotide exchange factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    45554549..45575007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173918.5 → XP_005173975.1  rap guanine nucleotide exchange factor 6

    UniProtKB/TrEMBL
    A0A8M2BLK9
    Conserved Domains (1) summary
    cl00047
    Location:49 → 154
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein Strain
Heading Accession and Version

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