U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101885900 C-type lectin domain family 4 member A [ Danio rerio (zebrafish) ]

Gene ID: 101885900, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC101885900
Gene description
C-type lectin domain family 4 member A
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101885900 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (29030665..29041981, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (29096118..29107454, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene natriuretic peptide receptor 1b Neighboring gene gon-4 like b Neighboring gene uncharacterized LOC137487912 Neighboring gene G patch domain containing 4 Neighboring gene nestin Neighboring gene myocyte enhancer factor 2d

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
C-type lectin domain family 4 member A; C-type lectin domain family 9 member A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    29030665..29041981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292397.4 → XP_009290672.1  C-type lectin domain family 4 member A isoform X2

    UniProtKB/TrEMBL
    A0A8M3B1R4
    Conserved Domains (1) summary
    smart00034
    Location:147 → 272
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

  2. XM_009292395.4 → XP_009290670.1  C-type lectin domain family 9 member A isoform X1

    See identical proteins and their annotated locations for XP_009290670.1

    UniProtKB/TrEMBL
    A0A8M3AI60
    Conserved Domains (1) summary
    smart00034
    Location:161 → 286
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials