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si:dkey-94l16.4 si:dkey-94l16.4 [ Danio rerio (zebrafish) ]

Gene ID: 101885814, updated on 9-Dec-2024

Summary

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Official Symbol
si:dkey-94l16.4provided by ZNC
Official Full Name
si:dkey-94l16.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-121214-291
See related
Ensembl:ENSDARG00000090142 AllianceGenome:ZFIN:ZDB-GENE-121214-291
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:dkey-94l16.4 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (531931..541203)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (525988..535026)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase (SDR family) member 7Cb Neighboring gene myosin phosphatase Rho interacting protein Neighboring gene brain specific kinase 146 Neighboring gene wu:fj29h11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
si:dkey-94l16.4; uncharacterized protein si:dkey-94l16.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    531931..541203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306365.4 → XP_009304640.1  uncharacterized protein si:dkey-94l16.4

    UniProtKB/TrEMBL
    A0A8M3B756, E7F2Z9
    Related
    ENSDARP00000126627.1, ENSDART00000152272.2
    Conserved Domains (1) summary
    cd15668
    Location:547 → 722
    ePHD_RAI1_like; Extended PHD finger found in retinoic acid-induced protein 1 (RAI1), transcription factor 20 (TCF-20) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials