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si:ch211-139g16.8 si:ch211-139g16.8 [ Danio rerio (zebrafish) ]

Gene ID: 101885410, updated on 4-Jan-2025

Summary

Official Symbol
si:ch211-139g16.8provided by ZNC
Official Full Name
si:ch211-139g16.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-100922-126
See related
Ensembl:ENSDARG00000093074 AllianceGenome:ZFIN:ZDB-GENE-100922-126
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in plasma membrane. Orthologous to human IGSF6 (immunoglobulin superfamily member 6). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See si:ch211-139g16.8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (18389371..18397260)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (18239636..18246868)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene sperm associated antigen 9a Neighboring gene uncharacterized LOC108182811 Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2a Neighboring gene ribosomal protein S2 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
immunoglobulin superfamily member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    18389371..18397260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163892.5XP_005163949.3  immunoglobulin superfamily member 6

    UniProtKB/TrEMBL
    A0A8M2BB56, E9QBF7
    Related
    ENSDARP00000123634.1, ENSDART00000146114.2