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LOC101882811 syntaphilin [ Danio rerio (zebrafish) ]

Gene ID: 101882811, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101882811
Gene description
syntaphilin
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC101882811 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (49143173..49159973)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (49154427..49168011)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene golgi membrane protein 1 Neighboring gene RAD21 cohesin complex component like 1 Neighboring gene FKBP prolyl isomerase 1Aa Neighboring gene major facilitator superfamily domain containing 2a-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
syntaphilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    49143173..49159973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167326.5 → XP_005167383.1  syntaphilin isoform X1

    UniProtKB/TrEMBL
    A0A8M2BES4
    Conserved Domains (1) summary
    pfam15290
    Location:56 → 220
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  2. XM_068223235.1 → XP_068079336.1  syntaphilin isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials