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lncRNA:CR42839 long non-coding RNA:CR42839 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178956, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:CR42839provided by FlyBase
Official Full Name
long non-coding RNA:CR42839provided by FlyBase
Primary source
FLYBASE:FBgn0262028
Locus tag
Dmel_CR42839
See related
AllianceGenome:FB:FBgn0262028
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR42839; Dmel\CR42839
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Genomic context

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See lncRNA:CR42839 in Genome Data Viewer
Location:
89A12-89A12; 3-58 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16004321..16008073, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11830043..11833795, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Helicase 89B Neighboring gene long non-coding RNA:CR44133 Neighboring gene serpent Neighboring gene GATAe Neighboring gene pannier

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
  2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  3. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR42839-RA; Dmel\lncRNA:CR42839-RA; CR42839-RA; Dmel\CR42839-RA
  • lncRNA:CR42839-RB; Dmel\lncRNA:CR42839-RB; CR42839-RB; Dmel\CR42839-RB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    16004321..16008073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048407.1 RNA Sequence

    Status: REVIEWED

  2. NR_037761.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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