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lncRNA:CR42721 long non-coding RNA::CR42721 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178845, updated on 9-Dec-2024

Summary

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Official Symbol
lncRNA:CR42721provided by FlyBase
Official Full Name
long non-coding RNA::CR42721provided by FlyBase
Primary source
FLYBASE:FBgn0261638
Locus tag
Dmel_CR42721
See related
AllianceGenome:FB:FBgn0261638
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR42721; Dmel\CR42721
Summary
Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See lncRNA:CR42721 in Genome Data Viewer
Location:
84A5-84A5; 3-48 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6767050..6779728)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2592772..2605450)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45593 Neighboring gene long non-coding RNA:CR44930 Neighboring gene Amalgam Neighboring gene long non-coding RNA:CR43435 Neighboring gene mir-993 stem loop Neighboring gene Deformed Neighboring gene long non-coding RNA::CR42651 Neighboring gene mir-10 stem loop

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
  2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  3. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • lncRNA:CR42721-RA; Dmel\lncRNA:CR42721-RA; CR42721-RA; Dmel\CR42721-RA
  • lncRNA:CR42721-RB; Dmel\lncRNA:CR42721-RB; CR42721-RB; Dmel\CR42721-RB

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    6767050..6779728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048332.1 RNA Sequence

    Status: REVIEWED

  2. NR_037752.2 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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