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snoRNA:Or-CD9b [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178808, updated on 9-Dec-2024

Summary

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Official Symbol
snoRNA:Or-CD9bprovided by FlyBase
Primary source
FLYBASE:FBgn0261974
Locus tag
Dmel_CR42805
See related
AllianceGenome:FB:FBgn0261974
Gene type
ncRNA
RNA name
snoRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR34101; CR34567; CR42805; Dmel\CR42805; DmOrC/D_9b; DmOr_cd9b snoRNA; Dmsnm60b; orphan CD9b; snm60; Snm60b; snmRNA:60Cb; snoRNA:Or-cd9b
Old locus tag
Dmel_CR34101; Dmel_CR34567
Summary
Located in nucleoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See snoRNA:Or-CD9b in Genome Data Viewer
Location:
60C2-60C2; 2-106 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (24186062..24186152)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (20073585..20073675)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Nucleolar protein at 60B Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene over compensating males Neighboring gene cytosolic 5'-nucleotidase IIIB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The coding/non-coding overlapping architecture of the gene encoding the Drosophila pseudouridine synthase. Riccardo S, et al. BMC Mol Biol, 2007 Feb 28. PMID 17328797, Free PMC Article
  2. Integrative analysis unveils new functions for the Drosophila Cutoff protein in noncoding RNA biogenesis and gene regulation. Pritykin Y, et al. RNA, 2017 Jul. PMID 28420675, Free PMC Article
  3. Comprehensive map of ribosomal 2'-O-methylation and C/D box snoRNAs in Drosophila melanogaster. Sklias A, et al. Nucleic Acids Res, 2024 Apr 12. PMID 38416577, Free PMC Article
  4. Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs. Huang ZP, et al. RNA, 2005 Aug. PMID 15987805, Free PMC Article
  5. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: small non-messenger RNA 60Cb; snoRNA:Or-cd9b
  • snoRNA:Or-CD9b-RA; Dmel\snoRNA:Or-CD9b-RA; CR42805-RA; Dmel\CR42805-RA

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    24186062..24186152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_037744.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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Gene LinkOut

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Research Materials