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pre-mod(mdg4)-X pre-mod(mdg4)-X [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178797, updated on 3-Dec-2024

Summary

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Official Symbol
pre-mod(mdg4)-Xprovided by FlyBase
Official Full Name
pre-mod(mdg4)-Xprovided by FlyBase
Primary source
FLYBASE:FBgn0261840
Locus tag
Dmel_CG42772
See related
AllianceGenome:FB:FBgn0261840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG42772; Dmel\CG42772; RX
Orthologs
all
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Genomic context

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See pre-mod(mdg4)-X in Genome Data Viewer
Location:
93D8-93D9; 3-71 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (21365609..21369330)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (17191331..17195052)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene pre-mod(mdg4)-T Neighboring gene pre-mod(mdg4)-Z Neighboring gene modifier of mdg4 Neighboring gene pre-mod(mdg4)-AB Neighboring gene pre-mod(mdg4)-C Neighboring gene pre-mod(mdg4)-E Neighboring gene modifier of mdg4 Neighboring gene pre-mod(mdg4)-AD Neighboring gene pre-mod(mdg4)-AE Neighboring gene pre-mod(mdg4)-V Neighboring gene pre-mod(mdg4)-W Neighboring gene pre-mod(mdg4)-U Neighboring gene pre-mod(mdg4)-Y Neighboring gene modifier of mdg4 Neighboring gene pre-mod(mdg4)-AA Neighboring gene pre-mod(mdg4)-O Neighboring gene pre-mod(mdg4)-N Neighboring gene modifier of mdg4 Neighboring gene tinman

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Brahma regulates a specific trans-splicing event at the mod(mdg4) locus of Drosophila melanogaster. Yu S, et al. RNA Biol, 2014. PMID 24526065, Free PMC Article
  2. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
  3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • trans-splicing precursor of mod(mdg4)-X

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
pre-mod(mdg4)-X
Names
CG42772-PA
CG42772-PB
anti-sense region 1
pre-mod(mdg4)-X-PA
pre-mod(mdg4)-X-PB
NP_001189257.2
  • trans-splicing precursor of mod(mdg4)-X
NP_001303529.2
  • trans-splicing precursor of mod(mdg4)-X

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    21365609..21369330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202328.2 → NP_001189257.2  pre-mod(mdg4)-X, isoform A, partial [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4JDG3

  2. NM_001316600.1 → NP_001303529.2  pre-mod(mdg4)-X, isoform B, partial [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4JDG3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4JDG3 A0A0B4JDG3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials