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Zfp764l1 zinc finger protein 764 like 1 [ Mus musculus (house mouse) ]

Gene ID: 101604, updated on 27-Nov-2024

Summary

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Official Symbol
Zfp764l1provided by MGI
Official Full Name
zinc finger protein 764 like 1provided by MGI
Primary source
MGI:MGI:2141981
See related
Ensembl:ENSMUSG00000078580 AllianceGenome:MGI:2141981
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E430018J23Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription coregulator activity. Predicted to be involved in cellular response to glucocorticoid stimulus and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF764 (zinc finger protein 764). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in duodenum adult (RPKM 6.3), large intestine adult (RPKM 5.3) and 28 other tissues See more
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Genomic context

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See Zfp764l1 in Genome Data Viewer
Location:
7 F3; 7 69.49 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126988851..126992834, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127390830..127393662, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 747 Neighboring gene STARR-positive B cell enhancer ABC_E9711 Neighboring gene zinc finger protein 764 Neighboring gene zinc finger protein 747 like 1 Neighboring gene STARR-positive B cell enhancer ABC_E4978 Neighboring gene STARR-positive B cell enhancer ABC_E4979 Neighboring gene SMT3 suppressor of mif two 3 homolog 2, pseudogene 2 (S. cerevisiae) Neighboring gene myeloma-overexpressed gene 2 protein homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription coregulator activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in cellular response to glucocorticoid stimulus ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC101604

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198011.2 → NP_932128.2  uncharacterized protein LOC101604

    Status: VALIDATED

    Source sequence(s)
    AC133494
    Consensus CDS
    CCDS52407.1
    UniProtKB/TrEMBL
    E9PZQ8, Q6IS61
    Related
    ENSMUSP00000126288.2, ENSMUST00000165495.2
    Conserved Domains (5) summary
    smart00349
    Location:22 → 81
    KRAB; krueppel associated box
    COG5048
    Location:223 → 383
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:339 → 359
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:22 → 61
    KRAB; KRAB box
    pfam13465
    Location:351 → 376
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    126988851..126992834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321911.3 → XP_017177400.1  uncharacterized protein LOC101604 isoform X2

    UniProtKB/TrEMBL
    Q921X0
    Conserved Domains (3) summary
    COG5048
    Location:132 → 292
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:248 → 268
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl30559
    Location:79 → 166
    PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]

  2. XM_006507164.2 → XP_006507227.1  uncharacterized protein LOC101604 isoform X2

    UniProtKB/TrEMBL
    Q921X0
    Conserved Domains (3) summary
    COG5048
    Location:132 → 292
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:248 → 268
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl30559
    Location:79 → 166
    PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]

  3. XM_006507163.2 → XP_006507226.1  uncharacterized protein LOC101604 isoform X1

    UniProtKB/TrEMBL
    Q6IS61
    Conserved Domains (4) summary
    smart00349
    Location:22 → 80
    KRAB; krueppel associated box
    COG5048
    Location:222 → 382
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:382 → 401
    zf-H2C2_2; Zinc-finger double domain

  4. XM_030241946.2 → XP_030097806.1  uncharacterized protein LOC101604 isoform X2

    UniProtKB/TrEMBL
    Q921X0
    Conserved Domains (3) summary
    COG5048
    Location:132 → 292
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:248 → 268
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl30559
    Location:79 → 166
    PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]
Nucleotide Protein Strain
Heading Accession and Version

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