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AHR aryl hydrocarbon receptor [ Orcinus orca (killer whale) ]

Gene ID: 101288192, updated on 8-Mar-2024

Summary

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Gene symbol
AHR
Gene description
aryl hydrocarbon receptor
See related
EnsemblRapid:ENSOORG00010002338
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See AHR in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 9 NC_064567.1 (69623190..69673998)

Chromosome 9 - NC_064567.1Genomic Context describing neighboring genes Neighboring gene anterior gradient 2, protein disulphide isomerase family member Neighboring gene anterior gradient 3, protein disulphide isomerase family member Neighboring gene uncharacterized LOC125965338 Neighboring gene phosphoglycerate mutase 1-like Neighboring gene sorting nexin 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064567.1 Chromosome 9 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PCB-associated changes in mRNA expression in killer whales (Orcinus orca) from the NE Pacific Ocean. Buckman AH, et al. Environ Sci Technol, 2011 Dec 1. PMID 21985468
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064567.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    69623190..69673998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004263467.4 → XP_004263515.1  aryl hydrocarbon receptor

    Related
    ENSOORP00010002335.1, ENSOORT00010003189.1
    Conserved Domains (4) summary
    cd00083
    Location:37 → 78
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:121 → 223
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:112 → 226
    PAS; PAS fold
    pfam14598
    Location:286 → 390
    PAS_11; PAS domain
Nucleotide Protein
Heading Accession and Version

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