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PHF1 PHD finger protein 1 [ Papio anubis (olive baboon) ]

Gene ID: 101027011, updated on 8-Mar-2024

Summary

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Gene symbol
PHF1
Gene description
PHD finger protein 1
See related
Ensembl:ENSPANG00000009191
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See PHF1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 6 NC_044981.1 (31754081..31759517)
103 previous assembly Panu_3.0 (GCF_000264685.3) 4 NC_018155.2 (32774153..32780207)

Chromosome 6 - NC_044981.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene kinesin family member C1 Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene zinc finger and BTB domain containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044981.1 Reference Panubis1.0 Primary Assembly

    Range
    31754081..31759517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009204925.2 → XP_009203189.2  PHD finger protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A096NHI6
    Related
    ENSPANP00000012434.1, ENSPANT00000026588.3
    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:539 → 565
    Mtf2_C; Polycomb-like MTF2 factor 2
    cd20449
    Location:30 → 82
    Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

  2. XM_017957797.2 → XP_017813286.1  PHD finger protein 1 isoform X2

    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:538 → 564
    Mtf2_C; Polycomb-like MTF2 factor 2
    cd20449
    Location:30 → 82
    Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

  3. XM_031667046.1 → XP_031522906.1  PHD finger protein 1 isoform X7

    Conserved Domains (3) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    cd20449
    Location:30 → 82
    Tudor_PHF1; Tudor domain found in PHD finger protein1 (PHF1) and similar proteins

  4. XM_031667047.1 → XP_031522907.1  PHD finger protein 1 isoform X8

    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam15258
    Location:333 → 426
    FAM222A; Protein family of FAM222A
    pfam18104
    Location:34 → 69
    Tudor_2; Jumonji domain-containing protein 2A Tudor domain

  5. XM_031667045.1 → XP_031522905.1  PHD finger protein 1 isoform X5

    Conserved Domains (4) summary
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    cd15582
    Location:188 → 239
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:444 → 470
    Mtf2_C; Polycomb-like MTF2 factor 2
    pfam18104
    Location:34 → 69
    Tudor_2; Jumonji domain-containing protein 2A Tudor domain

  6. XM_021936717.2 → XP_021792409.1  PHD finger protein 1 isoform X4

    Conserved Domains (4) summary
    smart00333
    Location:29 → 80
    TUDOR; Tudor domain
    cd15500
    Location:89 → 139
    PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:507 → 532
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl22851
    Location:188 → 206
    PHD_SF; PHD finger superfamily

  7. XM_021936716.1 → XP_021792408.1  PHD finger protein 1 isoform X3

    Conserved Domains (4) summary
    smart00333
    Location:29 → 80
    TUDOR; Tudor domain
    cd15582
    Location:156 → 207
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:507 → 532
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl22851
    Location:81 → 107
    PHD_SF; PHD finger superfamily

  8. XM_017957798.3 → XP_017813287.1  PHD finger protein 1 isoform X6

    Conserved Domains (3) summary
    cd15582
    Location:77 → 128
    PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
    pfam14061
    Location:428 → 454
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl22851
    Location:2 → 28
    PHD_SF; PHD finger superfamily

RNA

  1. XR_001901708.2 RNA Sequence

  2. XR_001901709.2 RNA Sequence

Nucleotide Protein
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