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GSC goosecoid homeobox [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100995285, updated on 8-Mar-2024

Summary

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Gene symbol
GSC
Gene description
goosecoid homeobox
See related
Ensembl:ENSPPAG00000040766
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See GSC in Genome Data Viewer
Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 15 NC_073264.2 (95915666..95917702, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 14 NC_073263.1 (95132298..95134186, complement)

Chromosome 15 - NC_073264.2Genomic Context describing neighboring genes Neighboring gene putative serpin A13 Neighboring gene small ribosomal subunit protein uS2B-like Neighboring gene large ribosomal subunit protein eL15-like Neighboring gene dicer 1, ribonuclease III

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An empirical test for branch-specific positive selection. Nickel GC, et al. Genetics, 2008 Aug. PMID 18689901, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein goosecoid
Names
Homeobox protein goosecoid

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073264.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    95915666..95917702 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003832829.5 → XP_003832877.1  homeobox protein goosecoid

    See identical proteins and their annotated locations for XP_003832877.1

    UniProtKB/Swiss-Prot
    A1YG57
    Related
    ENSPPAP00000035974.1
    Conserved Domains (1) summary
    pfam00046
    Location:163 → 217
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1YG57.1 GenPept UniProtKB/Swiss-Prot:A1YG57

Gene LinkOut

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