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LOC100911253 uncharacterized LOC100911253 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100911253, updated on 17-Aug-2024

Summary

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Symbol
LOC100911253provided by RGD
Full Name
uncharacterized LOC100911253provided by RGD
Primary source
RGD:6493681
See related
EnsemblRapid:ENSRNOG00000062599 AllianceGenome:RGD:6493681
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Adrenal (RPKM 81.3), Lung (RPKM 57.2) and 7 other tissues See more
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Genomic context

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See LOC100911253 in Genome Data Viewer
Location:
Xq34
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (116623482..116739424, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (111829130..111944986, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (119196246..119223835, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 4, pseudogene 4 Neighboring gene histidine triad nucleotide binding protein 1, pseudogene 3 Neighboring gene uncharacterized LOC120099355 Neighboring gene poly(rC) binding protein 2, pseudogene 3 Neighboring gene U2 spliceosomal RNA Neighboring gene histidine triad nucleotide binding protein 1 Neighboring gene uncharacterized LOC134484156 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 4, pseudogene 6 Neighboring gene uncharacterized LOC120099356 Neighboring gene poly(rC) binding protein 2, pseudogene 5 Neighboring gene poly(rC) binding protein 2, pseudogene 10 Neighboring gene poly(rC) binding protein 2, pseudogene 4 Neighboring gene U6 spliceosomal RNA Neighboring gene angiotensin II receptor, type 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    116623482..116739424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010061562.1 RNA Sequence

  2. XR_005498473.2 RNA Sequence

  3. XR_010061560.1 RNA Sequence

  4. XR_010061564.1 RNA Sequence

  5. XR_005498467.2 RNA Sequence

  6. XR_010061559.1 RNA Sequence

  7. XR_010061561.1 RNA Sequence

  8. XR_010061557.1 RNA Sequence

  9. XR_010061555.1 RNA Sequence

  10. XR_005498483.2 RNA Sequence

  11. XR_005498484.2 RNA Sequence

  12. XR_005498494.2 RNA Sequence

  13. XR_005498493.2 RNA Sequence

  14. XR_005498492.2 RNA Sequence

  15. XR_005498488.2 RNA Sequence

  16. XR_005498491.2 RNA Sequence

  17. XR_005498500.2 RNA Sequence

  18. XR_010061569.1 RNA Sequence

  19. XR_010061566.1 RNA Sequence

  20. XR_010061556.1 RNA Sequence

  21. XR_010061568.1 RNA Sequence

  22. XR_010061567.1 RNA Sequence

    Related
    ENSRNOT00000134043.1

  23. XR_010061563.1 RNA Sequence

  24. XR_010061565.1 RNA Sequence

  25. XR_010061558.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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