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LOC100910554 histone H2A type 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100910554, updated on 14-Nov-2024

Summary

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Symbol
LOC100910554provided by RGD
Full Name
histone H2A type 1-likeprovided by RGD
Primary source
RGD:6497956
See related
AllianceGenome:RGD:6497956
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H2AC4 (H2A clustered histone 4) and H2AC8 (H2A clustered histone 8). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See LOC100910554 in Genome Data Viewer
Location:
17p11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (47392512..47393171)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (42696845..42697423)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (44738552..44739195)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon AAU) 11 Neighboring gene histone cluster 1, H2bc Neighboring gene histone cluster 1, H4m Neighboring gene histone cluster 1, H2ao

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of nucleosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
histone H2A type 1-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    47392512..47393171
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003751711.6 → XP_003751759.1  histone H2A type 1-B-like

    UniProtKB/Swiss-Prot
    Q64598
    UniProtKB/TrEMBL
    A0A8I6ARS7
    Conserved Domains (2) summary
    PTZ00017
    Location:1 → 130
    PTZ00017; histone H2A; Provisional
    cd00074
    Location:6 → 120
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
Nucleotide Protein Strain
Heading Accession and Version

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