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LOC100909946 uncharacterized LOC100909946 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100909946, updated on 17-Aug-2024

Summary

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Symbol
LOC100909946provided by RGD
Full Name
uncharacterized LOC100909946provided by RGD
Primary source
RGD:6501057
See related
AllianceGenome:RGD:6501057
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 57.7), Spleen (RPKM 37.6) and 9 other tissues See more
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Genomic context

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See LOC100909946 in Genome Data Viewer
Location:
9q31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (67690124..67698018, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (60195007..60199453, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (65545203..65548342, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene hyccin PI4KA lipid kinase complex subunit 2 Neighboring gene BAF nuclear assembly factor 1, pseudogene 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit B3 Neighboring gene CASP8 and FADD-like apoptosis regulator Neighboring gene caspase 8 Neighboring gene flagellum associated containing coiled-coil domains 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    67690124..67698018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_357043.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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