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LOC100909679 amphiphysin-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100909679, discontinued on 6-Mar-2021

Summary

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Symbol
LOC100909679provided by RGD
Full Name
amphiphysin-likeprovided by RGD
Primary source
RGD:6502395
Gene type
protein coding
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 96.4), Lung (RPKM 21.6) and 6 other tissues See more
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Genomic context

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See LOC100909679 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 17 Unlocalized Scaffold NW_007906352.1 (1148..25604, complement)
106 latest, but not current Rn_Celera (GCF_000002265.2) Unplaced Scaffold NW_001090425.1 (2222..4632)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
amphiphysin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NW_007906352.1 Reference Rnor_6.0 Primary Assembly

    Range
    1148..25604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017602469.1 → XP_017457958.1  

  2. XM_017602470.1 → XP_017457959.1  

  3. XM_017602467.1 → XP_017457956.1  

  4. XM_017602468.1 → XP_017457957.1  

Alternate Rn_Celera

Genomic

  1. NW_001090425.1 Alternate Rn_Celera

    Range
    2222..4632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017588605.1 → XP_017444094.1  

Gene LinkOut

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