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RBMS3-AS3 RBMS3 antisense RNA 3 [ Homo sapiens (human) ]

Gene ID: 100873979, updated on 10-Dec-2024

Summary

Official Symbol
RBMS3-AS3provided by HGNC
Official Full Name
RBMS3 antisense RNA 3provided by HGNC
Primary source
HGNC:HGNC:39989
See related
Ensembl:ENSG00000235904 AllianceGenome:HGNC:39989
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in fat (RPKM 1.8), heart (RPKM 1.1) and 18 other tissues See more
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Genomic context

See RBMS3-AS3 in Genome Data Viewer
Location:
3p24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (29264194..29280939, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (29266532..29283285, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (29305685..29322430, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377009 Neighboring gene mesoderm specific transcript pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19623 Neighboring gene RNA binding motif single stranded interacting protein 3 Neighboring gene ribosomal protein S12 pseudogene 5 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:29517169-29517848 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_69111 Neighboring gene NANOG hESC enhancer GRCh37_chr3:29556777-29557394 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:29618323-29618824 Neighboring gene RBMS3 antisense RNA 2

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109804.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012262
    Related
    ENST00000798927.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    29264194..29280939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    29266532..29283285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)