U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pou5f1-rs1 POU domain, class 5, transcription factor 1, related sequence 1 [ Mus musculus (house mouse) ]

Gene ID: 100846986, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
Pou5f1-rs1provided by MGI
Official Full Name
POU domain, class 5, transcription factor 1, related sequence 1provided by MGI
Primary source
MGI:MGI:101892
See related
AllianceGenome:MGI:101892
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Otf3a; Oct4P2; Gm21053; Otf-3rs; Otf3-rs1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Pou5f1-rs1 in Genome Data Viewer
Location:
1 H1; 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (159121343..159121736)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (159293773..159294166)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930562F17 gene Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d pseudogene Neighboring gene t-complex protein 11 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E9187 Neighboring gene COP1, E3 ubiquitin ligase Neighboring gene small Cajal body-specific RNA 3A Neighboring gene microRNA 1843b Neighboring gene STARR-seq mESC enhancer starr_02785 Neighboring gene predicted gene, 31256

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA. Scarola M, et al. Nat Commun, 2015 Jul 9. PMID 26158551, Free PMC Article
  2. Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Siracusa LD, et al. Genomics, 1991 Jun. PMID 1676977

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Other Names

  • POU domain, class 5, transcription factor 1 pseudogene

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144489.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084287

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    159121343..159121736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_030587.1: Suppressed sequence

    Description
    NG_030587.1: This RefSeq was removed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.