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LOC100845934 4-coumarate--CoA ligase-like 1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100845934, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100845934
Gene description
4-coumarate--CoA ligase-like 1
Locus tag
BRADI_1g74870v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100845934 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (72156667..72160773)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (72204902..72209025)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic Neighboring gene uncharacterized LOC100846853 Neighboring gene uncharacterized LOC104582431 Neighboring gene peroxidase 44 Neighboring gene transcription factor-like protein DPB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CoA-ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-coumarate--CoA ligase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    72156667..72160773
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003558739.4 → XP_003558787.1  4-coumarate--CoA ligase-like 1

    UniProtKB/TrEMBL
    I1H9M3
    Conserved Domains (2) summary
    cd05904
    Location:37 → 536
    4CL; 4-Coumarate-CoA Ligase (4CL)
    PLN02246
    Location:13 → 540
    PLN02246; 4-coumarate--CoA ligase
Nucleotide Protein Strain
Heading Accession and Version

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