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LOC100840159 cleavage stimulating factor 64 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100840159, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100840159
Gene description
cleavage stimulating factor 64
Locus tag
BRADI_4g24180v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100840159 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (29172698..29178135, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (29351219..29356627, complement)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 9-like Neighboring gene DExH-box ATP-dependent RNA helicase DExH10 Neighboring gene dystrophia myotonica WD repeat-containing protein Neighboring gene protein TPLATE

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage stimulating factor 64

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    29172698..29178135 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003577750.4 → XP_003577798.1  cleavage stimulating factor 64 isoform X2

    UniProtKB/TrEMBL
    I1IN26
    Conserved Domains (3) summary
    COG0724
    Location:5 → 89
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12671
    Location:13 → 87
    RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
    pfam14327
    Location:168 → 230
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

  2. XM_010239589.3 → XP_010237891.1  cleavage stimulating factor 64 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3ESF0
    Conserved Domains (3) summary
    COG0724
    Location:5 → 89
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12671
    Location:13 → 87
    RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
    pfam14327
    Location:168 → 227
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2
Nucleotide Protein Strain
Heading Accession and Version

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