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LOC100839008 probable lactoylglutathione lyase, chloroplastic [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100839008, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100839008
Gene description
probable lactoylglutathione lyase, chloroplastic
Locus tag
BRADI_3g10330v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100839008 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (8519836..8522249, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (8506477..8508989, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 12 Neighboring gene casein kinase 1-like protein 4 Neighboring gene uncharacterized LOC112271627 Neighboring gene uncharacterized LOC112271821

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lactoylglutathione lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable lactoylglutathione lyase, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    8519836..8522249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003572466.4 → XP_003572514.1  probable lactoylglutathione lyase, chloroplastic

    UniProtKB/TrEMBL
    A0A0Q3HLX8, I1HZJ3
    Conserved Domains (3) summary
    PLN02300
    Location:71 → 348
    PLN02300; lactoylglutathione lyase
    TIGR00068
    Location:78 → 219
    glyox_I; lactoylglutathione lyase
    cl14632
    Location:217 → 340
    Glo_EDI_BRP_like; This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases