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LOC100838334 dystrophia myotonica WD repeat-containing protein [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100838334, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100838334
Gene description
dystrophia myotonica WD repeat-containing protein
Locus tag
BRADI_4g24190v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100838334 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (29180409..29186989, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (29358889..29365474, complement)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene DExH-box ATP-dependent RNA helicase DExH10 Neighboring gene cleavage stimulating factor 64 Neighboring gene protein TPLATE Neighboring gene putative B3 domain-containing protein Os04g0346900

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dystrophia myotonica WD repeat-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    29180409..29186989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003577744.4 → XP_003577792.1  dystrophia myotonica WD repeat-containing protein

    UniProtKB/TrEMBL
    I1IN27
    Conserved Domains (3) summary
    COG2319
    Location:229 → 510
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:232 → 275
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:299 → 510
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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