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LOC100837994 cellulose synthase A catalytic subunit 4 [UDP-forming] [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100837994, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100837994
Gene description
cellulose synthase A catalytic subunit 4 [UDP-forming]
Locus tag
BRADI_2g49912v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100837994 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (49693734..49699132)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (49948147..49953560)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene ras-related protein RIC2 Neighboring gene probable WRKY transcription factor 65 Neighboring gene receptor-like protein 51 Neighboring gene coiled-coil domain-containing protein 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 4 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    49693734..49699132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003569770.4 → XP_003569818.1  cellulose synthase A catalytic subunit 4 [UDP-forming]

    UniProtKB/TrEMBL
    A0A0Q3MZV5
    Conserved Domains (3) summary
    PLN02195
    Location:1 → 984
    PLN02195; cellulose synthase A
    cl11394
    Location:431 → 733
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl17238
    Location:10 → 51
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein Strain
Heading Accession and Version

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