U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100835640 alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100835640, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100835640
Gene description
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
Locus tag
BRADI_3g60820v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100835640 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (59389367..59394613, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (59684952..59690209, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene metal tolerance protein C2 Neighboring gene U-box domain-containing protein 44 Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene pentatricopeptide repeat-containing protein At2g17210

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    59389367..59394613 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010237892.3 → XP_010236194.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/TrEMBL
    I1IFU0
    Conserved Domains (1) summary
    cl11394
    Location:19 → 443
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_003570690.4 → XP_003570738.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X2

    UniProtKB/TrEMBL
    I1IFU1
    Conserved Domains (1) summary
    cl11394
    Location:19 → 442
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases