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LOC100827507 oxygen-evolving enhancer protein 1, chloroplastic [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100827507, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100827507
Gene description
oxygen-evolving enhancer protein 1, chloroplastic
Locus tag
BRADI_1g56580v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100827507 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (55353332..55354714, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (55426041..55427423, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene basic blue protein Neighboring gene basic blue protein Neighboring gene uncharacterized LOC112269690 Neighboring gene uncharacterized LOC106865691 Neighboring gene anti-sigma-I factor RsgI6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxygen evolving activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photosystem II assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of photosystem II oxygen evolving complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxygen-evolving enhancer protein 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    55353332..55354714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003557496.2 → XP_003557544.1  oxygen-evolving enhancer protein 1, chloroplastic

    UniProtKB/TrEMBL
    I1H3F3
    Conserved Domains (1) summary
    PLN00037
    Location:31 → 328
    PLN00037; photosystem II oxygen-evolving enhancer protein 1; Provisional
Nucleotide Protein Strain
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