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LOC100826446 UPF0160 protein C694.04c [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100826446, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100826446
Gene description
UPF0160 protein C694.04c
Locus tag
BRADI_3g52006v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100826446 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (52723223..52727089, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (53018848..53022706, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112271582 Neighboring gene uncharacterized protein At4g15970 Neighboring gene uncharacterized LOC100826762 Neighboring gene uncharacterized LOC100827070 Neighboring gene uncharacterized LOC112271902

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UPF0160 protein C694.04c

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    52723223..52727089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003570072.4 → XP_003570120.1  UPF0160 protein C694.04c

    UniProtKB/TrEMBL
    I1ICQ6
    Conserved Domains (1) summary
    pfam03690
    Location:64 → 383
    UPF0160; uncharacterized protein family (UPF0160)
Nucleotide Protein Strain
Heading Accession and Version

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