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LOC100826321 protein TSS [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100826321, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100826321
Gene description
protein TSS
Locus tag
BRADI_1g29090v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100826321 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (24638679..24657518, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (24639387..24658237, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene CASP-like protein 1D1 Neighboring gene serine/threonine-protein kinase 19 Neighboring gene uncharacterized LOC106865828 Neighboring gene WAT1-related protein At1g09380 Neighboring gene uncharacterized LOC104584955

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in organelle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TSS
Names
clustered mitochondria protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    24638679..24657518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003563154.4 → XP_003563202.1  protein TSS isoform X2

    UniProtKB/TrEMBL
    A0A0Q3H0D3
    Conserved Domains (7) summary
    cd15466
    Location:739 → 880
    CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
    sd00006
    Location:952 → 978
    TPR; TPR repeat [structural motif]
    pfam03957
    Location:1624 → 1723
    Jun; Jun-like transcription factor
    pfam13236
    Location:349 → 397
    CLU; Clustered mitochondria
    pfam13374
    Location:949 → 990
    TPR_10; Tetratricopeptide repeat
    pfam13424
    Location:946 → 1019
    TPR_12; Tetratricopeptide repeat
    pfam15044
    Location:44 → 115
    CLU_N; Mitochondrial function, CLU-N-term

  2. XM_024456721.1 → XP_024312489.1  protein TSS isoform X1

    Conserved Domains (5) summary
    cd15466
    Location:739 → 880
    CLU-central; An uncharacterized central domain of CLU mitochondrial proteins
    sd00006
    Location:952 → 978
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1050 → 1125
    TPR_12; Tetratricopeptide repeat
    pfam15044
    Location:44 → 115
    CLU_N; Mitochondrial function, CLU-N-term
    cl26464
    Location:1493 → 1788
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
Heading Accession and Version

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